MB12&13_Functional Genomics

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一、term forward genetic strategy正向遗传策略 Reverse genetic strategy反向遗传策略 CDS(coding sequence)蛋白质编码序列 synonymous同义突变 missense错义突变 nonsense无义突变=终止突变 readthrough连读突变 insertion插入突变 deletion缺失突变 Replication slippage复制滑移 Insertional mutagenesis插入诱变 Transposable elements转座子 genetic map (遗传图谱) Linkage analysis连锁分析 RFLP, Restriction frangment length polymorphisms限制性片段长度多态性 Codon bias密码子偏好 SSLP: Simple Sequence Length Polymorphism (=SSR, Simple sequence repeat)简单序列长度多态性,用的Microsatellite DNA STS: Sequence Tagged Site序列标签位点 CAPS:Cleaved Amplified Polymorphic Sequence切割的扩增多态性 Proteomics蛋白组学 TILLING (Targeted Induced Local Lesions in Genomes)定向诱导基因组局部突变 ISOTOPE-CODED AFFINITY TAG (ICAT):同位素编码亲和标签
二 3 methods to clone the insertion site:Inverse PCR反向PCR、TAIL-PCR热不对称嵌套PCR、Plasmid rescue质粒拯救
三、反向遗传学方法 (一)基因功能获得 Overexpression using strong promoters - 35S,Ubiquitin promoter。 Increase copy number - tandem repeat.
(二)功能缺失 1.Gene specific knockout (基因敲除),Site- directed mutagenesis(定点突变) 2.Screen mutant of specific gene from library 3.RNA interfering 4.Antisense RNA 5.TALLEN; CRISPR
四、Proteomics蛋白组学
(一)Gel-based The typical flow of gel-based proteomics (2DE & MS) – Sample preparation – First-dimension isoelectric focusing (IEF) – Second-dimension SDS-PAGE – Visualization & evaluation – Expression analysis – Protein identification by MS
(二)Yeast two-hybrid system