1.6 Ubiquitin in Generalized Born Implicit Solvent

cd ../1-4-gbis
vim ubq_gbis_eq.conf

structure          ../common/example-output/ubq.psf
coordinates        ../common/example-output/ubq.pdb

# Implicit Solvent
gbis                on
alphaCutoff         12.0
ionConcentration    0.3

../NAMD/namd3 ubq_gbis_eq.conf > ubq_gbis_eq.log &