- Go to 1-1-build directory
- Open VMD
- Load 1UBQ.pdb
take all the atoms from the protein and assign them to
ubq (the variable)
create a new pdb file based on the coordinates
type
vi ubq.pgn:
/Applications/VMD\ 1.9.4a57-arm64-Rev12.app/Contents/vmd/vmd_MACOSXARM64 -dispdev text -e ubq.pgn
